Publications

For latest publications, please check my Google Scholar profile.

2026

Fine-scale genetic structure and population-specific clinically relevant variants in the indigenous tribal populations of India

Authors: Datta, Sudeshna, Jena, Deepak, Ghosh, Arup , Biswas, Viplov Kumar, Jena, Sudarshana, Swain, Mamuni, More, Vinay, Mahapatra, Soumendu, Mishra, Rasmita, Gupta, Bhawna, others

Journal: medRxiv

Year: 2026

2025

Genetic variability, genotyping, and genomics of Mycobacterium leprae

Authors: Ansari, Afzal, Kumar, Roopendra, Ray, Suman Kumar , Patel, Aarti, Dwivedi, Purna, Ghosh, Arup, Machado, Edson, Suffys, Philip N, Singh, Pushpendra

Journal: FEMS Microbiology Reviews

Year: 2025
Genotypic and phenotypic diversity of Mycobacterium tuberculosis strains from eastern India

Authors: Ghosh, Arup, Biswas, Viplov Kumar, Bal, Himadri Bhusan , Das, Dasarathi, Pati, Sanghmitra, Gupta, Bhawna, Raghav, Sunil Kumar

Journal: Infection, Genetics and Evolution

Year: 2025
Isolation & genomic characterisation of a Multidrug-Resistant Acinetobacter baumannii ST149 from India: An emerging threat beyond the known international clones

Authors: Acharya, Sovon, Kushwaha, Parmanand, Desai, Shailesh , Longjam, Langamba Angom, Ghosh, Arup, Gandhi, Surajit, Verma, Ankur, Chatterjee, Biswaroop, Ruwali, Munindra, Rao, R Shyam Prasada, others

Journal: —

Year: 2025
Isolation and Whole-Genome Sequencing of a Less Prevalent Indian A. baumannii Strain Reveals Unique Uncharacterized Hypothetical Proteins and AMR-Linked ncRNAs.

Authors: Acharya, Sovon, Kushwaha, Parmanand, Desai, Shailesh , Angom, Langamba Longjam, Ghosh, Arup, Gandhi, Surajit, Verma, Ankur, Chatterjee, Biswaroop, Ruwali, Munindra, Rao, R Shyam Prasada, others

Journal: —

Year: 2025
Mapping genetic diversity with the GenomeIndia project

Authors: Bhattacharyya, Chandrika, Subramanian, Krithika, Uppili, Bharathram , Biswas, Nidhan K, Ramdas, Shweta, Tallapaka, Karthik Bharadwaj, Arvind, Prathima, Rupanagudi, Khader Valli, Maitra, Arindam, Nagabandi, Tulasi, others

Journal: Nature genetics

Year: 2025

2024

Impact of vaccination on SARS-CoV-2 evolution and immune escape variants

Authors: Jena, Deepak, Ghosh, Arup, Jha, Atimukta , Prasad, Punit, Raghav, Sunil Kumar

Journal: Vaccine

Year: 2024
Molecular Characterization and Genomic Surveillance of SARS-CoV-2 Lineages in Central India

Authors: Dwivedi, Purna, Sharma, Mukul, Ansari, Afzal , Ghosh, Arup, Bishwal, Subasa C, Ray, Suman Kumar, Katiyar, Manish, Kombiah, Subbiah, Kumar, Ashok, Sahare, Lalit, others

Journal: Viruses

Year: 2024
NCoR1: a key player regulating mycobacterium tuberculosis pathogenesis

Authors: Sen, Kaushik, Biswas, Viplov Kumar, Ghosh, Arup , Prusty, Subhasish, Nayak, Sourya Prakash, Podder, Sreeparna, Gupta, Bhawna, Raghav, Sunil Kumar

Journal: Autophagy

Year: 2024

2023

FtsE, the nucleotide binding domain of the ABC transporter homolog FtsEX, regulates septal PG synthesis in E. coli

Authors: Mallik, Sunanda, Dodia, Hiren, Ghosh, Arup , Srinivasan, Ramanujam, Good, Liam, Raghav, Sunil Kumar, Beuria, Tushar Kant

Journal: Microbiology Spectrum

Year: 2023
NCoR1 controls Mycobacterium tuberculosis growth in myeloid cells by regulating the AMPK-mTOR-TFEB axis

Authors: Biswas^, Viplov Kumar, Sen^, Kaushik, Ahad^, Abdul , Ghosh, Arup, Verma, Surbhi, Pati, Rashmirekha, Prusty, Subhasish, Nayak, Sourya Prakash, Podder, Sreeparna, Kumar, Dhiraj, others

Journal: PLoS Biology

Year: 2023

2022

CMTM6 attenuates cisplatin-induced cell death in OSCC by regulating AKT/c-Myc-driven ribosome biogenesis

Authors: Mohapatra, Pallavi, Mohanty, Sibasish, Ansari, Shamima Azma , Shriwas, Omprakash, Ghosh, Arup, Rath, Rachna, Majumdar, Saroj Kumar Das, Swain, Rajeeb K, Raghav, Sunil K, Dash, Rupesh

Journal: The FASEB Journal

Year: 2022
Genomic profiles of vaccine breakthrough SARS-CoV-2 strains from Odisha, India

Authors: Ghosh^, Arup, Walia^, Safal, Rattan, Roma , Kanampalliwar, Amol, Jha, Atimukta, Aggarwal, Shifu, Fatma, Sana, Das, Niyati, Chayani, Nirupama, Prasad, Punit, others

Journal: International Journal of Infectious Diseases

Year: 2022
Isolation and characterization of 5 SARS CoV-2 strains of different clades and lineages circulating in Eastern India

Authors: Singh, Bharati, Avula, Kiran, Chatterjee, Sanchari , Datey, Ankita, Ghosh, Arup, De, Saikat, Keshry, Supriya Suman, Ghosh, Soumyajit, Suryawanshi, Amol Ratnakar, Dash, Rupesh, others

Journal: Frontiers in Microbiology

Year: 2022
Long-read 16S-seq reveals nasopharynx microbial dysbiosis and enrichment of Mycobacterium and Mycoplasma in COVID-19 patients: a potential source of co-infection

Authors: Prasad, Punit, Mahapatra, Soumendu, Mishra, Rasmita , Murmu, Krushna Chandra, Aggarwal, Shifu, Sethi, Manisha, Mohapatra, Priyanka, Ghosh, Arup, Yadav, Rina, Dodia, Hiren, others

Journal: Molecular Omics

Year: 2022
Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes

Authors: Pathak, Ankit K, Mishra, Gyan Prakash, Uppili, Bharathram , Walia, Safal, Fatihi, Saman, Abbas, Tahseen, Banu, Sofia, Ghosh, Arup, Kanampalliwar, Amol, Jha, Atimukta, others

Journal: Nucleic Acids Research

Year: 2022

2021

Clinical, virological, immunological, and genomic characterization of asymptomatic and symptomatic cases with SARS-CoV-2 infection in India

Authors: Chatterjee, Sanchari, Datey, Ankita, Sengupta, Soumya , Ghosh, Arup, Jha, Atimukta, Walia, Safal, Singh, Sharad, Suranjika, Sandhya, Bhattacharya, Gargee, Laha, Eshna, others

Journal: Frontiers in Cellular and Infection Microbiology

Year: 2021
CMTM6 drives cisplatin resistance by regulating Wnt signaling through the ENO-1/AKT/GSK3$e̱ta$ axis

Authors: Mohapatra, Pallavi, Shriwas, Omprakash, Mohanty, Sibasish , Ghosh, Arup, Smita, Shuchi, Kaushik, Sandeep Rai, Arya, Rakesh, Rath, Rachna, Majumdar, Saroj Kumar Das, Muduly, Dillip Kumar, others

Journal: JCI insight

Year: 2021
Differential mitochondrial genome in patients with Rheumatoid Arthritis

Authors: Jaiswal^, Kumar Sagar, Khanna^, Shweta, Ghosh^, Arup , Padhan, Prasanta, Raghav, Sunil Kumar, Gupta, Bhawna

Journal: Autoimmunity

Year: 2021
Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity

Authors: Suresh, Voddu, Mohanty, Varshasnata, Avula, Kiran , Ghosh, Arup, Singh, Bharati, Reddy, Rajendra Kumar, Parida, Deepti, Suryawanshi, Amol Ratnakar, Raghav, Sunil Kumar, Chattopadhyay, Soma, others

Journal: The FASEB Journal

Year: 2021
Sequence analysis of Indian SARS-CoV-2 isolates shows a stronger interaction of mutant receptor-binding domain with ACE2

Authors: Dash, Pujarini, Turuk, Jyotirmayee, Behera, Santosh K , Palo, Subrata Kumar, Raghav, Sunil K, Ghosh, Arup, Sabat, Jyotsnamayee, Rath, Sonalika, Subhadra, Subhra, Rana, Khokan, others

Journal: International Journal of Infectious Diseases

Year: 2021
Single-cell immunogenomic approach identified SARS-CoV-2 protective immune signatures in asymptomatic direct contacts of COVID-19 cases

Authors: Sen, Kaushik, Datta, Sudeshna, Ghosh, Arup , Jha, Atimukta, Ahad, Abdul, Chatterjee, Sanchari, Suranjika, Sandhya, Sengupta, Soumya, Bhattacharya, Gargee, Shriwas, Omprakash, others

Journal: Frontiers in Immunology

Year: 2021
Zbtb10 transcription factor is crucial for murine cDC1 activation and cytokine secretion

Authors: Smita, Shuchi, Ghosh, Arup, Biswas, Viplov Kumar , Ahad, Abdul, Podder, Sreeparna, Jha, Atimukta, Sen, Kaushik, Acha-Orbea, Hans, Raghav, Sunil K

Journal: European Journal of Immunology

Year: 2021

2020

Altered mitochondrial proteome and functional dynamics in patients with rheumatoid arthritis

Authors: Khanna, Shweta, Padhan, Prasanta, Jaiswal, Kumar S , Jain, Ankit P, Ghosh, Arup, Tripathy, Archana, Gowda, Harsha, Raghav, Sunil K, Gupta, Bhawna

Journal: Mitochondrion

Year: 2020
Analysis of Indian SARS-CoV-2 genomes reveals prevalence of D614G mutation in spike protein predicting an increase in interaction with TMPRSS2 and virus infectivity

Authors: Raghav^, Sunil, Ghosh^, Arup, Turuk, Jyotirmayee , Kumar, Sugandh, Jha, Atimukta, Madhulika, Swati, Priyadarshini, Manasi, Biswas, Viplov K, Shyamli, P Sushree, Singh, Bharati, others

Journal: Frontiers in Microbiology

Year: 2020
ANN: A platform to annotate text with Wikidata IDs

Authors: Lubiana, Tiago, Weber, Sabine, Paranhos, Bruno Andrade , Ara{újo, Dayane, Dorrego-Rivas, Ana, Franzen, Delwen, Vi{ç}osa, Gabriela Nogueira, Ghosh, Arup, Garc{'i}a-Plaza, In{és Hojas

Journal: —

Year: 2020
BedSect: an integrated web server application to perform intersection, visualization, and functional annotation of genomic regions from multiple datasets

Authors: Mishra^, Gyan Prakash, Ghosh^, Arup, Jha, Atimukta , Raghav, Sunil Kumar

Journal: Frontiers in Genetics

Year: 2020
PAN-INDIA 1000 SARS-CoV-2 RNA genome sequencing reveals important insights into the outbreak

Authors: Maitra, Arindam, Raghav, Sunil, Dalal, Ashwin , Ali, Farhan, Paynter, Vanessa Molin, Paul, Dhiraj, Biswas, Nidhan K, Ghosh, Arup, Jani, Kunal, Chinnaswamy, Sreedhar, others

Journal: BioRxiv

Year: 2020

2019

Epigenetics and epigenomics analysis for autoimmune diseases

Authors: Gupta, Bhawna, Jaiswal, Kumar Sagar, Ghosh, Arup , Raghav, Sunil Kumar

Journal: Computational Epigenetics and Diseases

Year: 2019

2018

EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes

Authors: Panda, Arijit, Sen, Diya, Ghosh, Arup , Gupta, Akash, C, Mathu Malar, Prakash Mishra, Gyan, Singh, Deeksha, Ye, Wenwu, Tyler, Brett M, Tripathy, Sucheta

Journal: Molecular plant pathology

Year: 2018
Importance of EMT factor ZEB1 in cDC1 “MutuDC line” mediated induction of Th1 immune response

Authors: Smita^, Shuchi, Ahad^, Abdul, Ghosh, Arup , Biswas, Viplov K, Koga, Marianna M, Gupta, Bhawna, Acha-Orbea, Hans, Raghav, Sunil K

Journal: Frontiers in immunology

Year: 2018
Importance of EMT Factor ZEB1 in cDC1 “MutuDC Line” mediated induction of Th1 immune response. Front Immunol 9: 2604

Authors: Smita, S, Ahad, A, Ghosh, A , Biswas, VK, Koga, MM, Gupta, B, Acha-Orbea, H, Raghav, SK

Journal: —

Year: 2018

Publications

2026

Fine-scale genetic structure and population-specific clinically relevant variants in the indigenous tribal populations of India

2025

Genetic variability, genotyping, and genomics of Mycobacterium leprae

Genotypic and phenotypic diversity of Mycobacterium tuberculosis strains from eastern India

Isolation & genomic characterisation of a Multidrug-Resistant Acinetobacter baumannii ST149 from India: An emerging threat beyond the known international clones

Isolation and Whole-Genome Sequencing of a Less Prevalent Indian A. baumannii Strain Reveals Unique Uncharacterized Hypothetical Proteins and AMR-Linked ncRNAs.

Mapping genetic diversity with the GenomeIndia project

2024

Impact of vaccination on SARS-CoV-2 evolution and immune escape variants

Molecular Characterization and Genomic Surveillance of SARS-CoV-2 Lineages in Central India

NCoR1: a key player regulating mycobacterium tuberculosis pathogenesis

2023

FtsE, the nucleotide binding domain of the ABC transporter homolog FtsEX, regulates septal PG synthesis in E. coli

NCoR1 controls Mycobacterium tuberculosis growth in myeloid cells by regulating the AMPK-mTOR-TFEB axis

2022

CMTM6 attenuates cisplatin-induced cell death in OSCC by regulating AKT/c-Myc-driven ribosome biogenesis

Genomic profiles of vaccine breakthrough SARS-CoV-2 strains from Odisha, India

Isolation and characterization of 5 SARS CoV-2 strains of different clades and lineages circulating in Eastern India

Long-read 16S-seq reveals nasopharynx microbial dysbiosis and enrichment of Mycobacterium and Mycoplasma in COVID-19 patients: a potential source of co-infection

Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes

2021

Clinical, virological, immunological, and genomic characterization of asymptomatic and symptomatic cases with SARS-CoV-2 infection in India

CMTM6 drives cisplatin resistance by regulating Wnt signaling through the ENO-1/AKT/GSK3$e̱ta$ axis

Differential mitochondrial genome in patients with Rheumatoid Arthritis

Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity

Sequence analysis of Indian SARS-CoV-2 isolates shows a stronger interaction of mutant receptor-binding domain with ACE2

Single-cell immunogenomic approach identified SARS-CoV-2 protective immune signatures in asymptomatic direct contacts of COVID-19 cases

Zbtb10 transcription factor is crucial for murine cDC1 activation and cytokine secretion

2020

Altered mitochondrial proteome and functional dynamics in patients with rheumatoid arthritis

Analysis of Indian SARS-CoV-2 genomes reveals prevalence of D614G mutation in spike protein predicting an increase in interaction with TMPRSS2 and virus infectivity

ANN: A platform to annotate text with Wikidata IDs

BedSect: an integrated web server application to perform intersection, visualization, and functional annotation of genomic regions from multiple datasets

PAN-INDIA 1000 SARS-CoV-2 RNA genome sequencing reveals important insights into the outbreak

2019

Epigenetics and epigenomics analysis for autoimmune diseases

2018

EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes

Importance of EMT factor ZEB1 in cDC1 “MutuDC line” mediated induction of Th1 immune response

Importance of EMT Factor ZEB1 in cDC1 “MutuDC Line” mediated induction of Th1 immune response. Front Immunol 9: 2604